the entire directory only in Structural/Visualization

---

See also:

• Science: Biology: Biochemistry and Molecular Biology: Biomolecules: Proteins and Enzymes: Structure (42)

• Review of Molecular Modelling Programs - Reviews, screenshots, and table of features comparing over a dozen freely available molecular modelling and viewing programs.
• Avogadro - Open source advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers flexible rendering and a powerful plugin architecture.
• Biodesigner and iMol - A molecular viewer for Windows9x systems with sequence editor and protein builder. Free for academic use. Additionaly the iMol molecule viewer is available for Mac OS X systems.
• ChemCraft - Windows-based program for visualization of molecular structures, vibrational modes, molecular orbitals, energy gradient and other properties from log files produced by the GAMESS and Gaussian packages.
• CueMol - Free molecular structure visualization and rendering program for Windows.
• Facio - 3D-Molecular Modeling Software, available at no charge for the Windows platform. Has functions for visualization of biomolecules and results from GAMESS QM calculations, and for aligning and modifying structures.
• Historical Molecular Graphics - Digitized versions of 16mm movies of molecular structures produced in the early days of interactive molecular graphics.
• Jamberoo: Cross Platform Molecular Editor - Free cross-platform application for displaying, analyzing, editing, converting and animating molecular systems.
• Jmol - Open source molecule viewer written in Java. It runs as a standalone application and as a web browser applet.
• Labquip - Plastic molecular models for constructing polypeptides and DNA molecules.
• MOLDEN - Pre- and post-processing program for molecular and electronic structure, with Z-matrix editor, electron density visualization, and molecule animations. Available for Unix and VMS; free for academic use.
• Molcular Model Kits - Plastic molecular structure models for research and education in science, intended especially for biochemistry.
• Molegro Molecular Viewer - A free cross-platform application for visualization and analysis of molecules and molecular docking results.
• Molymod Molecular Models - Plastic molecular models for use in chemistry, biochemistry, molecular biology (DNA double helix), semiconductors and crystal lattice structures.
• Nanotube Modeler - A program for generating and visualizing the xyz-coordinates for nanotubes, nanocones, nanosheets, and fullerenes. For Windows; free demo version available.
• OpenRasMol - Provided for the convenience of users and software developers of open source versions of RasMol.
• Protein Explorer - A web-based viewer for the 3D structures of proteins, DNA and RNA. Requires Netscape and the Chime plugin, which is only available for Windows9x.
• ProteinScope - ProteinScope is a free program to view and create animations of Protein Data Bank PDB files.
• PyMOL - A free and flexible molecular graphics and modelling package which can be also used to generate animated sequences.
• PyMolWiki - User-contributed wiki to supplement the PyMOL documentation.
• RasMol - Molecular visualization freeware for proteins, DNA, and macromolecules. Freely available for Windows, Macintosh, and UNIX.
• Santorini and Patmos, Molecular Viewer and Screensaver - Read XYZ or PDB files of atoms and display them in a 3-dimensional view on Windows PCs.
• SweetMollyGrace - A suite of freeware tools for automating work of rendering and animating molecules. Generates high quality images of molecules from PDB, XYZ, or molfiles using raytracing tools (Povray and Raster3D).
• UCSF Chimera - Highly extensible, interactive molecular graphics program. It is the successor to UCSF Midas and MidasPlus. Free of charge for academic, government, non-profit, and personal use.
• VMD - A free program for visualization and analysis of biological systems such as proteins, nucleic acids, and lipid bilayer assemblies.
• Viewmol - An open-source graphical front end for computational chemistry programs such as Gaussian, Gamess, and Mopac. Available for Linux, FreeBSD, Mac OS X, and other Unices.
• Ymol - A free molecular visualization and animation program for the X window system. Creates images and movies, using either the built in renderer or povray. Still alpha.
• gOpenMol - A free program for the analysis of molecular dynamics trajectories and the display of molecular orbitals, electron densities and electrostatic potentials. Supports many file formats like the GaussianXX, Jaguar, CHARMM, and AMBER.

"Visualization" search on:   AOL - Ask - Bing - Gigablast - Google - Lycos - Yahoo - Yippy

Volunteer to edit this category.

Copyright © 2012 Netscape Terms of Use