In Partnership with AOL
See also:
  • DNA translator - Translates a plane format of the DNA sequence (first ORF only) to amino acid sequence. Provides numbering of every 10th AA and every 30th bp and align them by codon.
    [!]
  • Graphical Codon Usage Analyzer - Displays the codon quality in two different ways, codon usage frequency or relative adaptiveness values. FAQ included.
    [!]
  • NEBcutter - Provides a DNA sequence analysis to find restriction enzymes sites. Finds also non-overlapping open reading frames using the E.coli genetic code.
    [!]
  • Oligo Calc: Oligonucleotide Properties Calculator - Provides reverse complement sequence for DNA or RNA primer strands, self complementarity check, physical and thermodynamic constants, melting temperature (Tm). Includes calculation formulas.
    [!]
  • ORF Finder - Identifies all ORFs using the standard or alternative genetic codes. Provides an interactive, graphical interface and allow for saving of a deduced amino acid sequence in various formats. Allows searching against the sequence database using the BLAST server.
    [!]
  • PlasMapper - Offers server generated plasmid maps and image files, from input DNA sequences up to 20,000 bp. Includes citation, and downloadable source code. Maintained by the University of Alberta, USA.
    [!]
  • Primer-BLAST - Provides primers specific to the PCR template sequence. Includes primer pair specificity checking against a selected database.
    [!]
  • RaCC: Rare Codon Calculator - Determines the number and highlights a rare E. coli codons in a provided DNA sequence. Maintained by UCLA, USA.
    [!]
  • Rare Codon Analysis - Provides graphical and numerical representation of the codon adaptation index, frequency distribution and GC content of the DNA sequence. Maintained by the GenScript, USA.
    [!]
  • Readseq - Converts amino acid and nucleotide sequence data formats including FASTA, GenBank, Phylip and others. Maintained by NIH, USA.
    [!]
  • REBASE - The restriction enzyme database. Maintained by the New England Biolabs, USA.
    [!]
  • REBsites - Provides restriction enzyme digest analysis of the input DNA sequence. Results are presented graphically as a "virtual gel".
    [!]
  • RestrictionMapper - Finds restriction enzyme cleavage sites in linear and circular DNA sequences. Provides also a virtual digest function.
    [!]
  • Silent - Silent mutation restriction enzyme scan. Finds new restriction sites to insert (mutate) with no translation change.
    [!]
  • StarORF - A Java application that facilitates the identification of potential ORFs, based on provided DNA sequence and probable ORF length.
    [!]
  • TACG - DNA restriction enzyme analysis. Provides a number of hits per enzyme and a list of non-cutters. Allows for selection of the enzymes and parameters.
    [!]
  • WatCut - Provides restriction analysis, silent mutation scanning and SNP-RFLP analysis. Allows for utilization of all commercially available type II restriction enzymes.
    [!]
  • Webcutter 2.0 - Provides a map of restriction enzyme sites and a list of non-cutting enzymes for a corresponding DNA sequence.
    [!]
Volunteer to edit this category.
Copyright © 1998-2014 AOL Inc. Terms of Use
Visit our sister sites  mozilla.org | MusicMoz | Wikipedia

Last update: August 22, 2014 at 7:05:10 UTC - edit