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See also:
  • Allen Brain Atlas - Database of gene expression patterns in the mouse brain.
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  • ArrayExpress - Database of gene expression and other microarray data at the European Bioinformatics Institute (EBI), located at the Wellcome Trust Foundation in Cambridge, UK.
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  • BATEx - Data base for gene expression data from plants.
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  • The Database of Rice Transcription Factors (DRTF) - Free of charge database of transcription factors of rice. From CBI, Peking University, China.
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  • European Nucleotide Archive (ENA) - Provides a comprehensive record of the world's nucleotide sequencing information. Contains databases of next generation sequencing reads, including RNA-seq data, submitted to the Sequence Read Archive (SRA). It also contains databases of sequence assemblies and annotations.
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  • Exploring the Metabolic and Generic Control of Gene Expression - Database with the data for the experiments in the paper - DeRisi et. al. Science 278: 680-686. Includes text files that can be downloaded. The original paper requires a subscription fee.
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  • Gene Expression in Tooth - Database on the expression of different genes in the developing tooth.
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  • Gene Expression Machine Learning Repository - A collection of gene expression datasets that can be used for benchmarking gene expression oriented machine learning algorithms.
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  • Gene Expression Omnibus - Database of gene expression data from NCBI (National Center for Biotechnical Information). Includes a definable search by different characteristics.
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  • GenePaint - Database of gene expression patterns in the mouse embryo. From Max-Planck-Institute for Biophysical Chemistry, Dept. Genes and Behavior, Göttingen, Germany
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  • Genevestigator - Multi-organism microarray database and expression meta-analysis tool.
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  • Genomics Portals - Integrative platform for analyzing a large collection of genome-scale datasets (more than 400 million data points).
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  • IRESite: The Database of Experimentally Verified IRES Structures - This database contains information about the experimentally studied IRES (Internal Ribosome Entry Site) segments.
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  • Kyoto Encyclopedia of Genes and Genomes (KEGG) - Graphical and hypertext-based information from Kanehisa Laboratories in the Bioinformatics Center of Kyoto University, Japan.
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  • Mirage - Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction. From the Institute for Transcriptional Informatics (IFTI), USA.
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  • Oncomine - Compendium of cancer transcriptome profiles with analysis engine.
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  • Polbase - Repository of biochemical, genetic, and structural information about DNA polymerases.
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  • Ribosomal Database Project - From Center for Microbial Ecology, Michigan State University, USA
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  • Rice Transcription Factor Database - RiceTFDB is a public database of rice genes involved in transcriptional control. From the University of Potsdam, Berlin, Germany.
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  • RNase P Database - A compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional structures, and accessory information.
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  • StemBase - A database containing gene expression data from human and mouse stem cells and their derivatives.
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  • WormBase - Data bases on the genetics of C elegans and related nematodes.
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Last update: June 29, 2014 at 22:24:08 UTC - edit